Materials Map

Discover the materials research landscape. Find experts, partners, networks.

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The Materials Map is an open tool for improving networking and interdisciplinary exchange within materials research. It enables cross-database search for cooperation and network partners and discovering of the research landscape.

The dashboard provides detailed information about the selected scientist, e.g. publications. The dashboard can be filtered and shows the relationship to co-authors in different diagrams. In addition, a link is provided to find contact information.

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Materials Map under construction

The Materials Map is still under development. In its current state, it is only based on one single data source and, thus, incomplete and contains duplicates. We are working on incorporating new open data sources like ORCID to improve the quality and the timeliness of our data. We will update Materials Map as soon as possible and kindly ask for your patience.

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693.932 PEOPLE
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Vanhaecke, Tamara

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Vrije Universiteit Brussel

in Cooperation with on an Cooperation-Score of 37%

Topics

Publications (7/7 displayed)

  • 2024The application of natural language processing for the extraction of mechanistic information in toxicology4citations
  • 2021Increasing the Microfabrication Performance of Synthetic Hydrogel Precursors through Molecular Design8citations
  • 2021Increasing the microfabrication performance of synthetic hydrogel precursors through molecular design8citations
  • 2021Differentiation of multipotent human skin-derived precursors towards hepatic stellate cell-like cells for modelling liver fibrosis in vitrocitations
  • 2016Identification of potential genotoxicants in food contact materials using in silico toolscitations
  • 2012Effects of RNA interference-mediated suppression of connexin43 production on the expression of differentiation markers in cultures of adult primary rat hepatocytescitations
  • 2010The effect of the histone deacetylase inhibitor Trichostatin A on the metabolome of cultured primary hepatocytescitations

Places of action

Chart of shared publication
Vinken, Mathieu
3 / 5 shared
Luechtefeld, Thomas
1 / 1 shared
Corradi, Marie
1 / 1 shared
Haan, Alyanne De
1 / 1 shared
Teunis, Marc
1 / 3 shared
Pieters, Raymond
1 / 3 shared
Freedman, Jonathan H.
1 / 1 shared
Rodrigues, Robim
2 / 2 shared
Hoorick, Jasper Van
1 / 3 shared
Dobos, Agnes
2 / 3 shared
Rogiers, Vera
6 / 6 shared
Thienpont, Hugo
2 / 83 shared
Dubruel, Peter
2 / 31 shared
Roose, Patrice
2 / 5 shared
Ovsianikov, Aleksandr
2 / 6 shared
Arslan, Aysu
2 / 3 shared
Natale, Alessandra
2 / 2 shared
Van Erps, Jurgen
1 / 21 shared
Baudis, Stefan
2 / 6 shared
Bergen, Hugues Van Den
1 / 1 shared
Chalyan, Tatevik
2 / 2 shared
Vanmol, Koen
2 / 3 shared
Van Vlierberghe, Sandra
2 / 27 shared
Van Erps, Jürgen
1 / 2 shared
Van Hoorick, Jasper
1 / 2 shared
Van Den Bergen, Hugues
1 / 2 shared
Rodrigues, Robim M.
1 / 1 shared
Gatzios, Alexandra
1 / 1 shared
Kock, Joery De
1 / 1 shared
Rombaut, Matthias
1 / 1 shared
Boeckmans, Joost
1 / 2 shared
Van Bossuyt, Melissa
1 / 1 shared
Mertens, Birgit
1 / 1 shared
Benfenati, Emilio
1 / 1 shared
Miert, Sabine Van
1 / 1 shared
Raitano, Giuseppa
1 / 1 shared
Braeken, Els
1 / 2 shared
Hoeck, Els Van
1 / 2 shared
Buyl, Karolien
1 / 1 shared
Tatyana, Yordanova Doktorova
1 / 1 shared
Athersuch, Toby
1 / 1 shared
Cavill, Rachel
1 / 2 shared
Ellis, James K.
1 / 1 shared
Chan, Pui Hei
1 / 1 shared
Keun, Hector
1 / 2 shared
Nicholson, Jeremy K.
1 / 1 shared
Ebbels, Timothy
1 / 1 shared
Chart of publication period
2024
2021
2016
2012
2010

Co-Authors (by relevance)

  • Vinken, Mathieu
  • Luechtefeld, Thomas
  • Corradi, Marie
  • Haan, Alyanne De
  • Teunis, Marc
  • Pieters, Raymond
  • Freedman, Jonathan H.
  • Rodrigues, Robim
  • Hoorick, Jasper Van
  • Dobos, Agnes
  • Rogiers, Vera
  • Thienpont, Hugo
  • Dubruel, Peter
  • Roose, Patrice
  • Ovsianikov, Aleksandr
  • Arslan, Aysu
  • Natale, Alessandra
  • Van Erps, Jurgen
  • Baudis, Stefan
  • Bergen, Hugues Van Den
  • Chalyan, Tatevik
  • Vanmol, Koen
  • Van Vlierberghe, Sandra
  • Van Erps, Jürgen
  • Van Hoorick, Jasper
  • Van Den Bergen, Hugues
  • Rodrigues, Robim M.
  • Gatzios, Alexandra
  • Kock, Joery De
  • Rombaut, Matthias
  • Boeckmans, Joost
  • Van Bossuyt, Melissa
  • Mertens, Birgit
  • Benfenati, Emilio
  • Miert, Sabine Van
  • Raitano, Giuseppa
  • Braeken, Els
  • Hoeck, Els Van
  • Buyl, Karolien
  • Tatyana, Yordanova Doktorova
  • Athersuch, Toby
  • Cavill, Rachel
  • Ellis, James K.
  • Chan, Pui Hei
  • Keun, Hector
  • Nicholson, Jeremy K.
  • Ebbels, Timothy
OrganizationsLocationPeople

article

The effect of the histone deacetylase inhibitor Trichostatin A on the metabolome of cultured primary hepatocytes

  • Tatyana, Yordanova Doktorova
  • Athersuch, Toby
  • Vinken, Mathieu
  • Cavill, Rachel
  • Ellis, James K.
  • Chan, Pui Hei
  • Rogiers, Vera
  • Keun, Hector
  • Vanhaecke, Tamara
  • Nicholson, Jeremy K.
  • Ebbels, Timothy
Abstract

The use of cultured primary hepatocytes is of great importance in the pharmaco-toxicological testing of chemical compounds, and represents an alternative to dosing regimes conducted in immortalised cell lines or in vivo testing. By stabilising the epigenome, the histone deacetylase inhibitor TSA (trichostatin A) has been shown to preserve hepatocyte xenobiotic metabolic capacity after isolation, however the effects of TSA on endogenous metabolism are to date unknown.Using an NMR-based metabonomics approach we have investigated the impact of TSA treatment on the global profile and individual metabolite levels in hepatocytes to evaluate if the metabolome was stabilised and the normal metabolic phenotype retained in this model. Aqueous soluble metabolites were extracted from isolated rat hepatocytes after 24 and 72 hours exposure to TSA (25?M) together with time-matched controls and measured by 1H NMR spectroscopy. Multivariate analysis of the global profiles revealed a clear effect of TSA-treatment and discrimination between different time points. Metabolic differences between time points in the TSA treated group were less than those observed in the control, suggesting that TSA reduced the time-related effect on metabolism. Considering individual metabolites, TSA treatment was associated with decreased amounts of glycerophosphocholine (GPC), 3-hydroxybutyric acid (3HBA) and adenosine, an increase in glycogen and slowed the decrease of glutathione (GSH) over time. The effect on intracellular glycogen (glucose store) and the ketone body 3HBA (ketosis product) may indicate a change in energy metabolism.Effects on adenosine metabolism are consistent with other reported events following TSA exposure, specifically down-regulation of ecto-5'-nucleotidase. The effect on GSH suggests that bioavailability is higher in TSA treated cells: this would have implications in many metabolic processes and specifically phase II conjugation of xenobiotics. Levels of choline metabolites are frequently altered as cells are transformed to an immortalised or tumourigenic phenotype, and so the effect of TSA on GPC may reflect cell cycle arrest and preservation of the differentiated metabolic state. Collectively our data suggest that TSA treatment reduces the loss of a normal metabolic phenotype in cultured primary hepatocytes, improving the model as a tool to study endogenous liver metabolism and potentially affecting the accuracy of all biological assays in this system.

Topics
  • impedance spectroscopy
  • compound
  • phase
  • laser emission spectroscopy
  • Nuclear Magnetic Resonance spectroscopy
  • ketone