Materials Map

Discover the materials research landscape. Find experts, partners, networks.

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The Materials Map is an open tool for improving networking and interdisciplinary exchange within materials research. It enables cross-database search for cooperation and network partners and discovering of the research landscape.

The dashboard provides detailed information about the selected scientist, e.g. publications. The dashboard can be filtered and shows the relationship to co-authors in different diagrams. In addition, a link is provided to find contact information.

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The Materials Map is still under development. In its current state, it is only based on one single data source and, thus, incomplete and contains duplicates. We are working on incorporating new open data sources like ORCID to improve the quality and the timeliness of our data. We will update Materials Map as soon as possible and kindly ask for your patience.

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in Cooperation with on an Cooperation-Score of 37%

Topics

Publications (4/4 displayed)

  • 2017Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]citations
  • 2017Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]citations
  • 2002Electrochemical deposition of silver and gold from cyanide leaching solutions35citations
  • 2002Electrochemical recovery of silver from cyanide leaching solutions25citations

Places of action

Chart of shared publication
Oropeza, Mercedes. T.
1 / 1 shared
Ponce De León, C.
2 / 46 shared
Reyes-Cruz, Victor
1 / 1 shared
Cruz, Victor Reyes
1 / 1 shared
Oropeza, Mercedes
1 / 1 shared
Chart of publication period
2017
2002

Co-Authors (by relevance)

  • Oropeza, Mercedes. T.
  • Ponce De León, C.
  • Reyes-Cruz, Victor
  • Cruz, Victor Reyes
  • Oropeza, Mercedes
OrganizationsLocationPeople

document

Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]

  • Klopp, Christophe C.
  • Acloque, Hervé
  • Quéré, Pascale
  • Villa-Vialaneix, Nathalie
  • Mompart, Florence
  • Tixier-Boichard, Michèle
  • Marthey, Sylvain
  • Zytnicki, Matthias
  • Laurent, Fabrice
  • Muret, Kévin
  • Drouet, Françoise
  • Fabre, Stéphane
  • Lagarrigue, Sandrine
  • Bardou, Philippe
  • Cabau, Cédric
  • Goubil, Adeline
  • Cristobal, Magali San
  • Giuffra, Elisabetta
  • Gaspin, Christine
  • Quelen, Sarah Djebali
  • Rau, Andrea
  • Marti-Marimon, Maria
  • Vincent-Naulleau, Silvia
  • Tosser-Klopp, Gwenola
  • Munyard, Kylie
  • Robelin, David
  • González, Ignacio
  • Esquerre, Diane
  • Laan, Marie-Hélène Pinard-Van Der
  • Blanc, Fany
  • Pollet, Sophie
  • Derrien, Thomas
Abstract

Functional annotation of livestock genomes is a critical and obvious next step to derive maximum benefit for agriculture, animal science, animal welfare and human health. The aim of the Fr-AgENCODEprojectistogeneratemulti-speciesfunctionalgenomeannotationsbyapplyinghigh-throughputmolecularassaysonthree target tissues/cells relevant to the study of immune and metabolic traits. An extensive collection of stored samples from other tissues isavailableforfurtheruse(FAANGBiosamples‘FR-AGENCODE’).Fromeachoftwomalesandtwofemalesperspecies (pig, cattle, goat, chicken), strand-oriented RNA-seq and chromatinaccessibilityATAC-seqassayswereperformedonlivertissue and on two T-cell types (CD3+CD4+&CD3+CD8+)sorted from blood (mammals) or spleen (chicken). Chromosome Conformation Capture(insitu Hi-C)wasalsocarried out on liver. Sequencingreads from the 3 assays were processed using standard processing pipelines. While most (50–70%) RNA-seq reads mapped to annotated exons, thousands of novel transcripts and genes were found, includingextensionsofannotatedprotein-codinggenesandnewlncRNAs (see abstract #69857). Consistency of ATAC-seq results was confirmed by the significant proportion of called peaks in promoter regions (36–66%) and by the specific accumulation pattern ofpeaksaroundgenestarts(TSS)v. gene ends (TTS). Principal Component Analyses for RNA-seq (based on quantified gene expression) and ATAC-seq (based on quantified chromatin accessibility)highlightedclusterscharacterisedbycelltypeandsexinallspecies. From Hi-C data, we generated 40kb-resolution interactionmaps, profiled a genome-wide Directionality Index and identifiedfrom 4,100 (chicken) to 12,100 (pig) topologically-associating do- mains (TADs). Correlations were reported between RNA-seq andATAC-seq results (see abstract #71581). In summary, we presenthere an overview of the first multi-species and -tissue annotations of chromatin accessibility and genome architecture related to geneexpression for farm animals.

Topics
  • impedance spectroscopy