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Naji, M. |
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Motta, Antonella |
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Aletan, Dirar |
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Mohamed, Tarek |
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Ertürk, Emre |
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Taccardi, Nicola |
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Kononenko, Denys |
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Petrov, R. H. | Madrid |
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Alshaaer, Mazen | Brussels |
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Bih, L. |
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Casati, R. |
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Muller, Hermance |
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Kočí, Jan | Prague |
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Šuljagić, Marija |
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Kalteremidou, Kalliopi-Artemi | Brussels |
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Azam, Siraj |
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Ospanova, Alyiya |
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Blanpain, Bart |
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Ali, M. A. |
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Popa, V. |
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Rančić, M. |
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Ollier, Nadège |
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Azevedo, Nuno Monteiro |
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Landes, Michael |
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Rignanese, Gian-Marco |
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Winkler, Dave
University of Nottingham
in Cooperation with on an Cooperation-Score of 37%
Topics
Publications (17/17 displayed)
- 2021Exploring the Structure-Property Relationship of Magnesium Dissolution Modulatorscitations
- 2020Analyzing 3D Hyperspectral ToF-SIMS Depth Profile Data Using Self-Organizing Map-Relational Perspective Mappingcitations
- 2019Optimal machine learning models for robust materials classification using ToF-SIMS datacitations
- 2019Effect of mass segment size on polymer ToF-SIMS multivariate analysis using a universal data matrixcitations
- 2018High-Throughput Assessment and Modeling of a Polymer Library Regulating Human Dental Pulp-Derived Stem Cell Behaviorcitations
- 2018Distinguishing chemically similar polyamide materials with ToF-SIMS using self-organizing maps and a universal data matrixcitations
- 2017Materials Genome in Action: Identifying the Performance Limits of Physical Hydrogen Storagecitations
- 2016Using high throughput experimental data and in silico models to discover alternatives to toxic chromate corrosion inhibitorscitations
- 2015Relevance Vector Machines: Sparse classification methods for QSARcitations
- 2014Towards chromate-free corrosion inhibitors: structure property models for organic alternativescitations
- 2013Predicting properties of nanoparticles for drug delivery and tissue targeting
- 2012Predicting phase behaviour of nanostructured lipid-based self-assembled materials
- 2012Predicting complex phase behaviour of self-assembling drug delivery nanoparticles
- 2012Quantitative structure-property relationship modeling of diverse materials propertiescitations
- 2011Rational chemical control of stem cell properties
- 2011Robust and predictive modelling of amphiphilic nanostructured nanoparticle drug delivery vehicle phase behaviour
- 2006Simulation and modelling of chemical and biological complex systems
Places of action
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article
Distinguishing chemically similar polyamide materials with ToF-SIMS using self-organizing maps and a universal data matrix
Abstract
Time-of-flight secondary ion mass spectrometry (ToF-SIMS) is advancing rapidly, providing instruments with growing capabilities and resolution. The data sets generated by these instruments are likewise increasing dramatically in size and complexity. Paradoxically, methods for efficient analysis of these large, rich data sets have not improved at the same rate. Clearly, more effective computational methods for analysis of ToF-SIMS data are becoming essential. Several research groups are customizing standard multivariate analytical tools to decrease computational demands, provide user-friendly interfaces, and simplify identification of trends and features in large ToF-SIMS data sets. We previously applied mass segmented peak lists to data from PMMA, PTFE, PET, and LDPE. Self-organizing maps (SOMs), a type of artificial neural network (ANN), classified the polymers based on their molecular composition and primary ion probe type more effectively than simple PCA. The effectiveness of this approach led us to question whether it would be useful in distinguishing polymers that were very similar. How sensitive is the technique to changes in polymer chemical structure and composition? To address this question, we generated ToF-SIMS ion peak signatures for seven nylon polymers with similar chemistries and used our up-binning and SOM approach to classify and cluster the polymers. The widely used linear PCA method failed to separate the samples. Supervised and unsupervised training of SOMs using positive or negative ion mass spectra resulted in effective classification and separation of the seven nylon polymers. Our SOM classification method has proven to be tolerant of minor sample irregularities, sample-to-sample variations, and inherent data limitations including spectral resolution and noise. We have demonstrated the potential of machine learning methods to analyze ToF-SIMS data more effectively than traditional methods. Such methods are critically important for future complex data analysis and provide a pipeline for rapid classification and identification of features and similarities in large data sets.