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Naji, M. |
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Motta, Antonella |
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Aletan, Dirar |
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Mohamed, Tarek |
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Ertürk, Emre |
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Taccardi, Nicola |
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Kononenko, Denys |
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Petrov, R. H. | Madrid |
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Alshaaer, Mazen | Brussels |
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Bih, L. |
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Casati, R. |
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Muller, Hermance |
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Kočí, Jan | Prague |
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Šuljagić, Marija |
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Kalteremidou, Kalliopi-Artemi | Brussels |
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Azam, Siraj |
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Ospanova, Alyiya |
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Blanpain, Bart |
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Ali, M. A. |
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Popa, V. |
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Rančić, M. |
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Ollier, Nadège |
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Azevedo, Nuno Monteiro |
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Landes, Michael |
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Rignanese, Gian-Marco |
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Henderson, Alex
in Cooperation with on an Cooperation-Score of 37%
Topics
Publications (15/15 displayed)
- 2022Infrared micro-spectroscopy coupled with multivariate and machine learning techniques for cancer classification in tissue: a comparison of classification method, performance, and pre-processing techniquecitations
- 2016Evaluation of biomolecular distributions in rat brain tissues by means of ToF-SIMS using a continuous beam of Ar clusterscitations
- 2015Mass spectrometric imaging of brain tissue by time-of-flight secondary ion mass spectrometry - How do polyatomic primary beams C 60 + , Ar 2000 + , water-doped Ar 2000 + and (H 2 O) 6000 + compare?citations
- 2015Mass spectrometric imaging of brain tissue by time-of-flight secondary ion mass spectrometry – How do polyatomic primary beams C60+, Ar2000+, water-doped Ar2000+ and (H2O)6000+ compare?citations
- 2013Time-of-flight SIMS as a novel approach to unlocking the hypoxic properties of cancercitations
- 2013Peptide structural analysis using continuous Ar cluster and C60 ion beamscitations
- 2013Peptide structural analysis using continuous Ar cluster and C60 ion beamscitations
- 2013Peak picking as a pre-processing technique for imaging time of flight secondary ion mass spectrometrycitations
- 2013ToF-SIMS as a tool for metabolic profiling small biomolecules in cancer systemscitations
- 2012Peak picking as a pre-processing technique for imaging time of flight secondary ion mass spectrometry
- 2011Interactive spatio-spectral analysis of three-dimensional mass-spectral (3DxMS) chemical imagescitations
- 2011Three-dimensional mass spectral imaging of HeLa-M cells - Sample preparation, data interpretation and visualisationcitations
- 2009A comparison of PCA and MAF for ToF-SIMS image interpretationcitations
- 2008A new dynamic in mass spectral imaging of single biological cellscitations
- 2004ToF-SIMS studies of sulfuric acid hydrate filmscitations
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article
A comparison of PCA and MAF for ToF-SIMS image interpretation
Abstract
While time-of-flight secondary ion mass spectrometry (ToF-SIMS) image generation has been useful in the determination of the spatial distribution of chemistry in a broad application area, the amount of secondary ion signal available in each pixel remains small, hampering the use of multivariate analysis (MVA) approaches. The pre-treatment of data commonly comprises two approaches to increase pixel signal intensity prior to MVA: mass channel summation and pixel summation. Recent advances in instrumentation have lead to much greater signal per image pixel such that a true spectrum can be discerned at each point across the sample. In this study, we determine the outcomes of these two pre-treatments prior to principal components analysis (PCA) and maximum autocorrelation factor (MAF) analysis in comparison with high signal intensity data. Both PCA and MAF analyses of the high signal intensity data are presented with MAF being identified as the most effective approach. Image data was reduced in intensity to determine the effectiveness of MVA with lower spectral intensity. MAF was found to outperform PCA on such data, although both techniques were useful in the identification of the chemistry present. The data were then mass summed, using a number of different approaches, to reduce mass resolution, leading to a detrimental effect on PCA analysis, but little discernable change to MAF output. Reducing the spatial resolution by summing spectra from adjacent pixels, however, lead to a severe blurring of the MAF image structure, with PCA performing well. Copyright © 2009 John Wiley & Sons, Ltd.